Including C Code in an R Package Math, CS, Data
Often it is useful to use other programming languages within an R package. In particular, C code can often perform computations much faster than R can, sometimes hundreds of times faster. For this reason, many people like to use C for perform certain subroutines within their R code. Fortunately, R has built-in functionality that facilitates its interface with C. This paper, along with the accompanying package Cdemo, are intended to provide guidance for beginners who wish to use C code with R. The Cdemo package includes minimal working C code that interacts successfully with R. The Cdemo.tar archive contains the original set of files and folders that are built up into the full Cdemo package.
The process described below was completed on the Ubuntu 11.04 operating system. Likely, the same process will work for other Linux releases, as well as for Mac OS. However, the Windows operating system is quite different, and these instruction may not work in that case.
A Look at the Cdemo Package
The src folder within the package’s main director is where any C code belongs. In Cdemo, the C code is in the file Cadd.c. It contains a function that adds 1 to each element in a vector of doubles.
In our package’s main directory, there is a file called simply NAMESPACE and containing the lines
Now R code within this package can call the C function
Caddone by using the
.C method, as shown below. Within the R folder, we have a file addone.R with the code
Finally, the package has a DESCRIPTION file, and the folder man contains two simple documentation files. All of these files can be found in Cdemo.tar. To finish building your package, navigate a terminal session to the parent of your package’s main directory and run
> R CMD check Cdemo
> R CMD build Cdemo
This creates Cdemo_1.0.tar.gz which is ready to be installed and used. Good luck!
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